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Planttfcat

WebFurthermore, there are other databases, such as PlantTFDB 3.0, ProFITS, GrassTFDB in Grassius, PlantTFcat and TreeTFDB, which provide classifications of TFs in Arabidopsis and other plants [13 ... WebPlantTFcat: An online plant transcription factor and transcriptional regulator categorization and analysis tool. Dai X. Sinharoy S. Udvardi M. Zhao P.X. BMC Bioinformatics, 2013. …

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WebOct 4, 2016 · PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool. BMC Bioinformatics. 2013; 14: 321 View in Article Scopus (98) PubMed Crossref Google Scholar Gapper N.E. Giovannoni J.J. Watkins C.B. Understanding development and ripening of fruit crops in an ‘omics’ era. Hortic. Res. 2014; … WebJan 16, 2013 · PlantTFcat is a high-performance web-based analysis tool designed to identify and categorize plant TF/TR/CR genes from genome-scale protein and nucleic acid sequences by systematically analyzing InterProScan domain patterns in protein sequences. tiffany christopher band https://arodeck.com

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WebAug 21, 2016 · in PlnTFDB with support from PlantTFcat. Excluding the afore-mentioned DDT family, a total of 23 TR families including TAZ and mTERF that were incorrectly classified into TFs were derived from PlnTFDB. All these TR families were reviewed and accepted based on literature support (Supplemental Table 2). WebRESULTS. Here, we present PlantTFcat, a high-performance web-based analysis tool that is designed to identify and categorize plant TF/TR/CR genes from genome-scale protein and … WebApr 27, 2024 · While the first two steps (OrthoFinder and PlantTFCat) involved identification by pairwise alignment and domain analysis, the final step was a manual curation where we checked whether the proteins in question fulfil minimal domain requirement for ARFs. The first two identification methods gave consistent results. tiffany christmas window display

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Planttfcat

Genome-wide identification of auxin response factors (ARFs

WebDec 8, 2024 · PlantTFDB 4.0: toward a central hub for transcription factors and regulatory interactions in plants. Nucleic Acids Research, 45 (D1):D1040-D1045. Jin JP, He K, Tang … WebSep 27, 2014 · Compared to PlantTFcat, our annotation has better coverage and higher accuracy in identifying and classifying Yugu1 TFs. In summary, our recovery rate was …

Planttfcat

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WebNov 12, 2013 · We have developed a web-based analysis server, PlantTFcat (http://plantgrn.noble.org/PlantTFcat/), which utilizes InterProScan to systematically …

WebThe Plant Transcription Factor Database (Pln TFDB), which is an integrative database that provides putatively complete sets of transcription factors and transcriptional regulators in plant species,... WebApr 30, 2014 · $ sudo chmod -R 777 /usr/local/bin/PlantTFcat/session /usr/local/bin/PlantTFcat/miniIPR/tmp; Not added to default PATH, because instructions …

WebAnother function that controls a plant's overall output is its vasculature, which not only provides strength but also gives as a conduit for the transport of minerals, water, and photosynthesis ... WebJun 20, 2014 · Similarly, PlantTFcat ( http://plantgrn.noble.org/PlantTFcat/) also identified 52 WRKY domain-containing proteins. The majority of additional proteins identified by NCBI CDD and PlantTFcat as WRKY TFs, had incomplete N-terminal ends of the WRKY domain (CrWRKY11, CrWRKY15, CrWRKY48, and CrWRKY49).

WebWe used BLAT (a BLAST-like alignment tool) to determine the positions of candidate sequences on the wheat genome. BLAT is a sequence alignment tool similar to BLAST but it is structured differ- ently. It quickly finds similarities in DNA and proteins but requires an exact or nearly exact match to find a hit [17].

WebResults Here, we present PlantTFcat, a high-performance web-based analysis tool that is designed to identify and categorize plant TF/TR/CR genes from genome-scale protein and nucleic acid sequences by systematically analyzing InterProScan domain patterns in … tiffany chrysanthemum flatwareWebPlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool. Xinbin Dai+, Senjuti Sinharoy+, Michael Udvardi and Patrick Xuechun Zhao* tiffany chrysanthemum silverware for saleWebResults: Here, we present PlantTFcat, a high-performance web-based analysis tool that is designed to identify and categorize plant TF/TR/CR genes from genome-scale protein and … tiffany chrysanthemum silverwarehttp://planttfdb.gao-lab.org/ the mavericks half moon bayWebDownload Table Benchmark evaluation of PlantTFcat using the PlnTFDB reference database from publication: PlantTFcat: An online plant transcription factor and … tiffany chuaWebResults: Here, we present PlantTFcat, a high-performance web-based analysis tool that is designed to identify and categorize plant TF/TR/CR genes from genome-scale protein and … the mavericks from hell to paradise cdWeb95 The identifications of transcription factors (TF) were analyzed by PlantTFcat online tool 96 (http://plantgrn.noble.org/PlantTFcat) [14]. SSRs (Simple Sequence Repeats), one of molecular markers, it 97 is a potent tool for genetic study and marker assisted selection (MAS) in many crops [15,16]. the mavericks greatest hits full album