WebFurthermore, there are other databases, such as PlantTFDB 3.0, ProFITS, GrassTFDB in Grassius, PlantTFcat and TreeTFDB, which provide classifications of TFs in Arabidopsis and other plants [13 ... WebPlantTFcat: An online plant transcription factor and transcriptional regulator categorization and analysis tool. Dai X. Sinharoy S. Udvardi M. Zhao P.X. BMC Bioinformatics, 2013. …
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WebOct 4, 2016 · PlantTFcat: an online plant transcription factor and transcriptional regulator categorization and analysis tool. BMC Bioinformatics. 2013; 14: 321 View in Article Scopus (98) PubMed Crossref Google Scholar Gapper N.E. Giovannoni J.J. Watkins C.B. Understanding development and ripening of fruit crops in an ‘omics’ era. Hortic. Res. 2014; … WebJan 16, 2013 · PlantTFcat is a high-performance web-based analysis tool designed to identify and categorize plant TF/TR/CR genes from genome-scale protein and nucleic acid sequences by systematically analyzing InterProScan domain patterns in protein sequences. tiffany christopher band
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WebAug 21, 2016 · in PlnTFDB with support from PlantTFcat. Excluding the afore-mentioned DDT family, a total of 23 TR families including TAZ and mTERF that were incorrectly classified into TFs were derived from PlnTFDB. All these TR families were reviewed and accepted based on literature support (Supplemental Table 2). WebRESULTS. Here, we present PlantTFcat, a high-performance web-based analysis tool that is designed to identify and categorize plant TF/TR/CR genes from genome-scale protein and … WebApr 27, 2024 · While the first two steps (OrthoFinder and PlantTFCat) involved identification by pairwise alignment and domain analysis, the final step was a manual curation where we checked whether the proteins in question fulfil minimal domain requirement for ARFs. The first two identification methods gave consistent results. tiffany christmas window display